Python-integrated GMS3 Tools

Bridging Python and DigitalMicrograph for multidimensional STEM data processing in GMS 3.

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This repository provides practical scripts and guidance for working across Python and DigitalMicrograph in Gatan Microscopy Suite 3 (GMS3). It helps users extend familiar GMS workflows into reproducible multidimensional data analysis.

Visual highlights

Python-integrated GMS 3 workflow for 4D-STEM processing
Python-integrated GMS3 tools for bringing custom analysis closer to acquisition data.
NMF and PCA workflow in GMS 3 Python
NMF and PCA workflows available from the Python-integrated GMS3 environment.
Scripting workflow for GMS 3 Python
Practical scripting connects DigitalMicrograph workflows with Python analysis.